440 skills found · Page 5 of 15
foryourhealth111-pixel / ena-databaseAccess European Nucleotide Archive via API/FTP. Retrieve DNA/RNA sequences, raw reads (FASTQ), genome assemblies by accession, for genomics and bioinformatics pipelines. Supports multiple formats.
foryourhealth111-pixel / metabolomics-workbench-databaseAccess NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/z searches, study metadata, for metabolomics and biomarker discovery.
foryourhealth111-pixel / geopandasPython library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files
foryourhealth111-pixel / bio-database-evidenceUnified biological database evidence owner. Use for gene annotation, variant clinical significance, cancer mutation evidence, GWAS trait associations, pathway mapping, target-disease evidence, protein structures, protein interaction networks, reference single-cell census queries, and cross-database…
NVIDIA / msa-search-nimGenerate multiple sequence alignments (MSAs) for protein sequences using the ColabFold MSA-Search NIM. Use for homolog search, UniRef30/ColabFold env searches, A3M or FASTA alignments, paired MSA search for complexes, PDB70 structural templates, hosted NVIDIA API calls, or local Docker deployment.
samber / golang-databaseComprehensive guide for Go database access — parameterized queries, struct scanning, NULLable columns, transactions, isolation levels, SELECT FOR UPDATE, connection pool, batch processing, context propagation, and migration tooling
samber / golang-popular-librariesGolang library and framework selection — vetted production-ready options by category (web, database, testing, logging, messaging), new and experimental stdlib packages, standard-library-first tradeoffs, and maturity signals (maintenance, license, importer counts).
taishi-i / awesome-chatgpt-searchSearch 2500+ curated ChatGPT and LLM open-source repositories
google-deepmind / clinvar-databaseUse when needing clinical significance, pathogenicity classifications (e.g., Pathogenic, Benign, VUS), clinical evidence rationales, or finding "hard positive" benchmark controls for human genomic variants.
google-deepmind / dbsnp-databaseUse when you want to look up, map, and search for short genetic variants (SNPs, indels) in NCBI's dbSNP database. Resolves between rsIDs, genomic coordinates in VCF format, and HGVS strings.
google-deepmind / interpro-databaseIdentify domains, families, and sites in proteins; find all proteins in a family or sharing a domain; explore species distribution for a domain; annotate genomes with protein families and GO terms. InterPro combines 14 databases (e.g., Pfam, CDD) into one searchable resource.
google-deepmind / chembl-databaseQuery the ChEMBL database for bioactive molecules, drug targets, bioactivity data, approved drugs, and chemical structures
google-deepmind / gtex-databaseUse when you want to retrieve quantitative RNA expression data and variant eQTL information from the GTEx (Genotype-Tissue Expression) Project across 54 non-diseased tissue sites.
google-deepmind / human-protein-atlas-databaseUse when you want to retrieve semi-quantitative protein expression and spatial localisation data from the Human Protein Atlas (HPA).
google-deepmind / literature-search-europepmcSearch Europe PMC for scientific literature and download open-access full texts and PDFs. Retrieve full-text XML/plain text by PMCID, get citation lists and bibliography.
google-deepmind / ncbi-sequence-fetchRetrieve protein and nucleotide sequences from NCBI databases using E-utilities. Supports direct accession lookup, CDS translation, gene+organism search, locus lookup, PubMed-linked sequences, patent protein extraction, and organism+length fallback search
google-deepmind / openfda-databaseQuery, search, and download data from the openFDA API for drugs, devices, foods, tobacco, cosmetics, animal and veterinary products, substances, and transparency data.
google-deepmind / pdb-databaseUse when you want to search for or download experimentally-determined 3D structures for biomolecules (proteins, nucleic acids, bound ligands). Supports searching by sequence similarity, structure similarity, chemical and other attributes.
google-deepmind / pubmed-databaseSearch PubMed for scientific literature, including published clinical trials. Fetch abstracts and full text. Link published research to biological databases (gene, protein, nucleotide, PubChem) to discover associations between papers and specific compounds or genes.
google-deepmind / encode-ccres-databaseQuery the ENCODE Registry of cis-Regulatory Elements (cCREs) via the SCREEN GraphQL API, or make custom queries to the ENCODE Portal REST API for experiments and files (ChIP-seq peaks, etc.)
google-deepmind / literature-search-openalexQuery the OpenAlex scholarly database for research papers, authors, institutions, topics, sources, publishers, funders, geo-locations, and keywords
google-deepmind / opentargets-databaseQuery Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for therapeutic target identification.
google-deepmind / uniprot-databaseAccess protein metadata, function, taxonomy, and sequences across UniProtKB, UniParc, and UniRef
google-deepmind / ensembl-databaseQuery the Ensembl database to resolve gene, transcript, and protein IDs, fetch genomic or protein sequences, retrieve gene structures (exons), and get variant consequence and effect predictions (VEP).
google-deepmind / pubchem-databaseQuery PubChem, search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics
google-deepmind / quickgo-databaseQuery the QuickGO and Evidence & Conclusion Ontology (ECO) REST API. Use this when you need to map genes to biological processes, molecular functions, or cellular components, find genes associated with a specific pathway/GO term, or explore the Gene Ontology hierarchy.
google-deepmind / clinical-trials-databaseQuery ClinicalTrials.gov via APIv2
google-deepmind / jaspar-databaseQuery the JASPAR database for Transcription Factor (TF) binding profiles
google-deepmind / reactome-databaseQuery the Reactome database (Analysis and Content Services)
google-deepmind / unibind-databaseQueries the UniBind database for experimentally validated transcription factor (TF) binding sites
