Universal Skills

Enforce the replication-protocol.md rule by cross-checking numeric claims in a manuscript against the actual R / Stata / Python outputs. Report PASS/FAIL per claim against tolerance thresholds. Use before submission and before releasing a replication package.

skillpython

pedrohcgs / review-paper

Comprehensive manuscript review with three modes: single-pass (default), --adversarial critic-fixer loop, and --peer [journal] simulated peer-review pipeline (editor + 2 dispositioned referees + editorial decision, calibrated to a target journal).

pedrohcgs / commit

Commit the current work — runs the quality, consistency and passport gates, branches off main if needed, stages specific files, and writes a commit whose subject states what is now true.

pedrohcgs / new-diagram

Scaffold a new TikZ diagram from the snippet gallery with prevention rules pre-applied (explicit node dimensions, coordinate map, directional edge labels). Compiles standalone, invokes tikz-reviewer with citations from tikz-measurement.md, and loops on revisions until APPROVED.

pedrohcgs / r-package-check

Run the full R package release gate — regenerate docs, run the test suite, run R CMD check --as-cran, and triage every ERROR / WARNING / NOTE against CRAN policy before a release or submission

pedrohcgs / verify-claims

Run Chain-of-Verification (CoVe) on a draft or a block of text with factual claims. Spawns the `claim-verifier` agent in a fresh context (never a conversation fork) so it never sees the draft — then reports which claims are supported, contradicted, or unverifiable

pedrohcgs / slide-excellence

Multi-agent comprehensive slide review (visual + pedagogy + proofreading, plus TikZ / parity / substance conditionally)

pedrohcgs / checkpoint

Save a structured state snapshot before stopping or handing off. Captures the active plan, recent decisions, file pointers (with line numbers), open questions, and the next 1–3 actions into a checkpoint file under `quality_reports/checkpoints/`.

pedrohcgs / compress-session

Distill the current conversation into a structured note (decisions made, open questions, file pointers with line numbers, next 1–3 actions) and save to `quality_reports/session_logs/` before auto-compression.

pedrohcgs / diagnose

Root-cause a failing or wrong empirical result with a disciplined reproduce → minimise → hypothesise → instrument → fix loop, instead of guessing-and-poking

skillpython

pedrohcgs / grant-proposal

Scaffold a research grant proposal (NSF, NIH, ERC, or foundation) by composing existing primitives — pulls identification strategy from an `/interview-me` spec, delegates the data-management plan to `/data-management-plan` and the facilities statement to `/capture-environment`, and emits a funder-re…

pedrohcgs / preregister

Draft a structured preregistration document (OSF, AsPredicted, or AEA RCT Registry style) from a research spec or free-form study description.

skilldesign

pedrohcgs / qa-quarto

Adversarial Quarto-vs-Beamer parity QA. A critic agent compares the Quarto HTML render to the Beamer PDF benchmark for content/visual parity; a fixer agent applies fixes; loops until APPROVED or two consecutive rounds turn up nothing new (fallback cap 5 rounds)

skillpdf

pedrohcgs / replication-package

Assemble a submission-ready replication package to the AEA Data and Code Availability Standard (DCAS) / openICPSR / Social Science Reproduction Platform expectations — standard replication README, dataset manifest, computational-requirements capture, a Table/Figure → script:line map, and a confident…

pedrohcgs / respond-to-eval

Turn student course evaluations (free-text + numeric) into an actionable teaching-improvement plan — the teaching analogue of /respond-to-referees.

pedrohcgs / scaffold-exercises

Scaffold a graded problem set with sections, problems, worked solutions, and short "why this matters" explainers across analytical, empirical, and coding types

pedrohcgs / stata-replication

End-to-end Stata replication pipeline — scaffolds numbered `.do` files in `scripts/stata/`, executes them via the `stata-mcp` MCP server, captures logs and outputs to `output/`, and produces publication-ready tables (esttab) and figures (graph export). Mirrors `/data-analysis` for R-first projects

skillmcp

pedrohcgs / teach-from-paper

Turn a research paper into teaching materials — a lecture outline, the 3-5 results worth presenting (with intuition), a slide skeleton ready for `/create-lecture`, discussion questions, and a problem-set brief. Reads the paper end-to-end and pitches to a stated audience level

skillpdf

pedrohcgs / vaccinate

Qualify a check before it is allowed to clear anything — prove it can detect the failure it is meant to catch. Seeds known defects into a copy of a real artifact plus a clean control, runs the checker, and reports recall and false-positive rate into a qualification ledger

skillreviewrust

pedrohcgs / validate-bib

Validate bibliography entries against citations in all lecture files. Structural checks (missing/unused entries, malformed fields) by default; `--semantic` adds citation-drift detection, DOI verification, and style-consistency checks.

pedrohcgs / voice-profile

Extract a written voice profile from your own prior papers, then use it to keep new drafts sounding like you. Reads a corpus one document at a time via subagents, produces a reusable profile on disk (lexicon, sentence rhythm, how you open and close, hedging habits, deliberate quirks), and audits a d…

skillvoice

pedrohcgs / capture-environment

Snapshot the computational environment for a replication package — detects the analysis stack (R / Stata / Python) and emits the right lockfiles (renv.lock + sessionInfo.txt, requirements.txt / environment.yml / uv.lock, Stata version + ado package list), records seeds and RNG kind, optionally write…

skilldockerpython

pedrohcgs / coauthor-brief

Generate a co-author / collaborator handoff brief for a multi-author, multi-machine project — summarizing what changed since the last brief (git delta), the current state of each artifact (manuscript, analysis, slides), open questions, how to reproduce locally, and any restricted-data access steps

skillgitrest

pedrohcgs / data-analysis

End-to-end R data analysis pipeline — exploration → cleaning → regression → publication-ready tables and figures

pedrohcgs / data-management-plan

Draft a funder-compliant Data Management Plan (NSF DMP, NIH DMS Policy 2023, ERC, Horizon Europe) by composing the confidential-data and environment-capture primitives. Sections cover data description, formats/metadata, storage/backup, access/sharing, preservation/archiving, and roles

pedrohcgs / disclosure-check

Pre-screen analysis outputs (tables, figures, logs) built on restricted or confidential data for statistical-disclosure-limitation problems before any release.

skillrest