12,467 skills found · Page 172 of 416
google-deepmind / clinvar-databaseUse when needing clinical significance, pathogenicity classifications (e.g., Pathogenic, Benign, VUS), clinical evidence rationales, or finding "hard positive" benchmark controls for human genomic variants.
google-deepmind / dbsnp-databaseUse when you want to look up, map, and search for short genetic variants (SNPs, indels) in NCBI's dbSNP database. Resolves between rsIDs, genomic coordinates in VCF format, and HGVS strings.
google-deepmind / interpro-databaseIdentify domains, families, and sites in proteins; find all proteins in a family or sharing a domain; explore species distribution for a domain; annotate genomes with protein families and GO terms. InterPro combines 14 databases (e.g., Pfam, CDD) into one searchable resource.
google-deepmind / predictingthepastAncient text restoration, attribution, dating, contextualization, and embedding via Aeneas (Latin) / Ithaca (Ancient Greek)
google-deepmind / alphagenome-atlas-website-linksConstructs deep-links and URLs for the AlphaGenome Atlas website. Supports generating single-variant exploration links (1-based chr:pos:ref>alt), genomic locus views (1-based closed chr:start-end), candidate summary tables, and AlphaGenome reference vs. alternate predictions
google-deepmind / alphagenome-single-variant-analysisAnalyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), histone marks (ChIP), and transcription factors using the AlphaGenome API
google-deepmind / chembl-databaseQuery the ChEMBL database for bioactive molecules, drug targets, bioactivity data, approved drugs, and chemical structures
google-deepmind / gtex-databaseUse when you want to retrieve quantitative RNA expression data and variant eQTL information from the GTEx (Genotype-Tissue Expression) Project across 54 non-diseased tissue sites.
google-deepmind / human-protein-atlas-databaseUse when you want to retrieve semi-quantitative protein expression and spatial localisation data from the Human Protein Atlas (HPA).
google-deepmind / literature-search-europepmcSearch Europe PMC for scientific literature and download open-access full texts and PDFs. Retrieve full-text XML/plain text by PMCID, get citation lists and bibliography.
google-deepmind / ncbi-sequence-fetchRetrieve protein and nucleotide sequences from NCBI databases using E-utilities. Supports direct accession lookup, CDS translation, gene+organism search, locus lookup, PubMed-linked sequences, patent protein extraction, and organism+length fallback search
google-deepmind / openfda-databaseQuery, search, and download data from the openFDA API for drugs, devices, foods, tobacco, cosmetics, animal and veterinary products, substances, and transparency data.
google-deepmind / pdb-databaseUse when you want to search for or download experimentally-determined 3D structures for biomolecules (proteins, nucleic acids, bound ligands). Supports searching by sequence similarity, structure similarity, chemical and other attributes.
google-deepmind / pubmed-databaseSearch PubMed for scientific literature, including published clinical trials. Fetch abstracts and full text. Link published research to biological databases (gene, protein, nucleotide, PubChem) to discover associations between papers and specific compounds or genes.
google-deepmind / ucsc-conservation-and-tfbsFetch Evolutionary Conservation scores (phyloP, phastCons) and Transcription Factor Binding Sites (TFBS) from the UCSC Genome Browser
google-deepmind / encode-ccres-databaseQuery the ENCODE Registry of cis-Regulatory Elements (cCREs) via the SCREEN GraphQL API, or make custom queries to the ENCODE Portal REST API for experiments and files (ChIP-seq peaks, etc.)
google-deepmind / literature-search-biorxivBrowse, filter, and download life sciences, biology, and medical preprints from bioRxiv and medRxiv. Supports fetching paper metadata by DOI, and browsing by date range with category and keyword filters.
google-deepmind / literature-search-openalexQuery the OpenAlex scholarly database for research papers, authors, institutions, topics, sources, publishers, funders, geo-locations, and keywords
google-deepmind / opentargets-databaseQuery Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for therapeutic target identification.
google-deepmind / uniprot-databaseAccess protein metadata, function, taxonomy, and sequences across UniProtKB, UniParc, and UniRef
google-deepmind / embl-ebi-olsQuery and search the EMBL-EBI Ontology Lookup Service (OLS) for biomedical ontology terms, definitions, and hierarchies across 250+ ontologies (e.g., GO, DOID, HP)
google-deepmind / ensembl-databaseQuery the Ensembl database to resolve gene, transcript, and protein IDs, fetch genomic or protein sequences, retrieve gene structures (exons), and get variant consequence and effect predictions (VEP).
google-deepmind / pubchem-databaseQuery PubChem, search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics
google-deepmind / quickgo-databaseQuery the QuickGO and Evidence & Conclusion Ontology (ECO) REST API. Use this when you need to map genes to biological processes, molecular functions, or cellular components, find genes associated with a specific pathway/GO term, or explore the Gene Ontology hierarchy.
google-deepmind / workflow-skill-creatorDistills a completed user workflow or interaction into a reusable agent skill
google-deepmind / clinical-trials-databaseQuery ClinicalTrials.gov via APIv2
google-deepmind / credentialsInstructions for handling API keys and credentials safely, verifying their presence, and prompting the user to add them if missing using a safe protocol.
google-deepmind / jaspar-databaseQuery the JASPAR database for Transcription Factor (TF) binding profiles
google-deepmind / literature-search-arxivSearch for scientific papers, preprints, and publications on arXiv. Extract metadata, abstracts, and download full-text PDFs or HTML versions of papers
google-deepmind / pymolVisualize, analyze, and render protein and molecular structures using PyMOL
