12,194 skills found · Page 134 of 407
aipoch / scGPTEmbed and annotate single-cell expression data with scGPT, a foundation model for single-cell biology. Use this skill when: (1) Producing cell embeddings from an AnnData for clustering/integration, (2) Zero-shot or fine-tuned cell-type annotation, (3) Gene-level representation for perturbation/GRN t…
aipoch / ColabFold MSA server (api.colabfold.com)Structure prediction for protein, nucleic-acid, and small-molecule complexes with Boltz-2 (Passaro & Wohlwend et al. 2025, github.com/jwohlwend/boltz).
aipoch / Borzoi (PyTorch port)Predict genome-wide functional tracks (RNA-seq, CAGE, DNase, ChIP) from DNA sequence with Borzoi. Use this skill when: (1) Scoring the regulatory effect of a variant on expression/accessibility, (2) Generating predicted coverage tracks for a locus, (3) Prioritising non-coding variants by predicted t…
aipoch / skill-creatorCreate, revise, evaluate, publish, and improve Open-Science Skills through the native JavaScript host.skills composer
aipoch / ColabFold MSA server (api.colabfold.com)Predict protein structure for monomers and multimers with AlphaFold2 via the ColabFold runner (Mirdita et al. 2022, github.com/sokrypton/ColabFold; AlphaFold2 Jumper et al. 2021).
aipoch / ColabFold MSA server (api.colabfold.com)Structure prediction for protein, nucleic-acid, and small-molecule complexes with the Chai-1 foundation model (Chai Discovery 2024, github.com/chaidiscovery/chai-lab).
aipoch / DiffDock-LPredict small-molecule binding poses with DiffDock-L (Corso et al. 2023/2024, github.com/gcorso/DiffDock) — blind diffusion docking that places a ligand into a protein pocket without a predefined search box and ranks the samples with a learned confidence model.
aipoch / ProteinMPNNInverse-fold a protein backbone (PDB structure) into amino-acid sequence with ProteinMPNN (Dauparas et al. 2022, github.com/dauparas/ProteinMPNN).
aipoch / docx-generationUse when creating a Word DOCX report from Markdown, converting Markdown tables and lists to DOCX, or choosing a workflow for editing an existing DOCX while preserving its structure and styles. Use this workflow before running Markdown-to-DOCX shell commands.
aipoch / env-managementUse when a notebook run fails on a missing package (ImportError, ModuleNotFoundError, "there is no package called"), when you need to inspect an installed package version, or when you need to install, add, or manage Python or R packages for the notebook runtime.
remotion-dev / remotion-interactivityStructure Remotion markup for interactivity
remotion-dev / remotion-markupContent, animation and effects best practices
remotion-dev / remotion-best-practicesRouter for all Remotion skills
zebbern / audit-flowInteractive system flow tracing across CODE, API, AUTH, DATA, NETWORK layers with SQLite persistence and Mermaid export. Use for security audits, compliance documentation, flow tracing, feature ideation, brainstorming, debugging, architecture reviews, or incident post-mortems.
zebbern / broken-authenticationThis skill should be used when the user asks to "test for broken authentication vulnerabilities", "assess session management security", "perform credential stuffing tests", "evaluate password policies", "test for session fixation", or "identify authentication bypass flaws".
zebbern / cloud-penetration-testingThis skill should be used when the user asks to "perform cloud penetration testing", "assess Azure or AWS or GCP security", "enumerate cloud resources", "exploit cloud misconfigurations", "test O365 security", "extract secrets from cloud environments", or "audit cloud infrastructure".
zebbern / html-injection-testingThis skill should be used when the user asks to "test for HTML injection", "inject HTML into web pages", "perform HTML injection attacks", "deface web applications", or "test content injection vulnerabilities". It provides comprehensive HTML injection attack techniques and testing methodologies.
zebbern / idor-testingThis skill should be used when the user asks to "test for insecure direct object references," "find IDOR vulnerabilities," "exploit broken access control," "enumerate user IDs or object references," or "bypass authorization to access other users' data." It provides comprehensive guidance for detecti…
zebbern / linux-shell-scriptingThis skill should be used when the user asks to "create bash scripts", "automate Linux tasks", "monitor system resources", "backup files", "manage users", or "write production shell scripts". It provides ready-to-use shell script templates for system administration.
zebbern / metasploit-frameworkThis skill should be used when the user asks to "use Metasploit for penetration testing", "exploit vulnerabilities with msfconsole", "create payloads with msfvenom", "perform post-exploitation", "use auxiliary modules for scanning", or "develop custom exploits".
zebbern / pipeline-blueprintProvide CI/CD best practices and pipeline templates for GitHub Actions and GitLab CI, recommending configurations based on project type (frontend, backend, fullstack, library, monorepo, mobile).
zebbern / scanning-toolsThis skill should be used when the user asks to "perform vulnerability scanning", "scan networks for open ports", "assess web application security", "scan wireless networks", "detect malware", "check cloud security", or "evaluate system compliance".
zebbern / secure-code-reviewSystematically reviews code for SQL injection, XSS, SSRF, broken access control, cryptographic failures, and other common OWASP Top 10 vulnerabilities, providing vulnerable code examples and ready-to-use remediation guidance.
zebbern / shodan-reconnaissanceThis skill should be used when the user asks to "search for exposed devices on the internet," "perform Shodan reconnaissance," "find vulnerable services using Shodan," "scan IP ranges with Shodan," or "discover IoT devices and open ports." It provides comprehensive guidance for using Shodan's search…
zebbern / smtp-penetration-testingThis skill should be used when the user asks to "perform SMTP penetration testing", "enumerate email users", "test for open mail relays", "grab SMTP banners", "brute force email credentials", or "assess mail server security". It provides comprehensive techniques for testing SMTP server security.
zebbern / sqlmap-database-pentestingThis skill should be used when the user asks to "automate SQL injection testing," "enumerate database structure," "extract database credentials using sqlmap," "dump tables and columns from a vulnerable database," or "perform automated database penetration testing." It provides comprehensive guidance…
zebbern / windows-privilege-escalationThis skill should be used when the user asks to "escalate privileges on Windows," "find Windows privesc vectors," "enumerate Windows for privilege escalation," "exploit Windows misconfigurations," or "perform post-exploitation privilege escalation." It provides comprehensive guidance for discovering…
zebbern / wireshark-analysisThis skill should be used when the user asks to "analyze network traffic with Wireshark", "capture packets for troubleshooting", "filter PCAP files", "follow TCP/UDP streams", "detect network anomalies", "investigate suspicious traffic", or "perform protocol analysis".
zebbern / wordpress-penetration-testingThis skill should be used when the user asks to "pentest WordPress sites", "scan WordPress for vulnerabilities", "enumerate WordPress users, themes, or plugins", "exploit WordPress vulnerabilities", or "use WPScan". It provides comprehensive WordPress security assessment methodologies.
zebbern / xss-html-injectionThis skill should be used when the user asks to "test for XSS vulnerabilities", "perform cross-site scripting attacks", "identify HTML injection flaws", "exploit client-side injection vulnerabilities", "steal cookies via XSS", or "bypass content security policies".
