713 skills found ¡ Page 12 of 24
microsoft / entra-agent-idMicrosoft Entra Agent ID (preview) for creating OAuth2-capable AI agent identities via Microsoft Graph beta API. Covers Agent Identity Blueprints, BlueprintPrincipals, Agent Identities, required permissions, sponsors, and Workload Identity Federation.
microsoft / azure-appconfiguration-pyAzure App Configuration SDK for Python. Use for centralized configuration management, feature flags, and dynamic settings. Triggers: "azure-appconfiguration", "AzureAppConfigurationClient", "feature flags", "configuration", "key-value settings".
microsoft / azure-cosmos-db-pyBuild Azure Cosmos DB NoSQL services with Python/FastAPI following production-grade patterns
microsoft / azure-appconfiguration-tsBuild applications using Azure App Configuration SDK for JavaScript (@azure/app-configuration)
FreedomIntelligence / bio-bedgraph-handlingbedGraph is a text format for displaying continuous-valued data on genome browsers. Common for coverage, signal intensity, and scores.
FreedomIntelligence / bio-ctdna-mutation-detectionDetects somatic mutations in circulating tumor DNA using variant callers optimized for low allele fractions with UMI-based error suppression. Reliably detects mutations at VAF above 0.5 percent using consensus-based approaches
FreedomIntelligence / bio-data-visualization-specialized-omics-plotsThis skill provides reusable plotting functions for common omics visualizations that can be applied across different analysis types: - Volcano plots (any DE result) - MA plots (any log-fold-change data) - PCA plots (any high-dimensional data) - Enrichment dotplots (manual, not enrichplot) - ExpressiâĻ
FreedomIntelligence / bio-genome-assembly-metagenome-assemblyMetagenome assembly reconstructs genomes from mixed microbial communities. Long reads enable recovery of complete circular genomes and resolution of strain-level differences.
FreedomIntelligence / bio-genome-engineering-hdr-template-designDesign homology-directed repair donor templates for CRISPR knock-ins using primer3-py. Create ssODN, dsDNA, or plasmid templates with optimized homology arms
FreedomIntelligence / bio-immunoinformatics-neoantigen-predictionIdentify tumor neoantigens from somatic mutations using pVACtools for personalized cancer immunotherapy. Predict mutant peptides that bind patient HLA and may elicit T-cell responses
FreedomIntelligence / bio-cfdna-preprocessingPreprocesses cell-free DNA sequencing data including adapter trimming, alignment optimized for short fragments, and UMI-aware duplicate removal using fgbio. Applies cfDNA-specific quality thresholds and fragment length filtering
FreedomIntelligence / arboretoInfer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3)
FreedomIntelligence / bio-alignment-filteringFilter alignments by flags, quality, and regions using samtools and pysam.
FreedomIntelligence / bio-alignment-indexingCreate indices for random access to alignment files using samtools and pysam.
FreedomIntelligence / bio-alignment-sortingSort alignment files by coordinate or read name using samtools and pysam.
FreedomIntelligence / bio-alignment-validationPost-alignment quality control to verify alignment quality and identify issues.
FreedomIntelligence / bio-batch-downloadsDownload large numbers of records from NCBI efficiently using the history server, batching, and proper rate limiting.
FreedomIntelligence / bio-blast-searchesRun BLAST searches against NCBI databases using Biopython's Bio.Blast module.
FreedomIntelligence / bio-clip-seq-clip-peak-callingPureCLIP uses an HMM to model crosslink sites, incorporating enrichment and truncation signals.
FreedomIntelligence / bio-codon-usageAnalyze codon usage patterns and calculate codon adaptation metrics using Biopython.
FreedomIntelligence / bio-data-visualization-circos-plotsCircular genome visualizations for displaying multiple data tracks around chromosome ideograms.
FreedomIntelligence / bio-entrez-fetchRetrieve records from NCBI databases using Biopython's Entrez module (EFetch, ESummary utilities).
FreedomIntelligence / bio-entrez-linkNavigate between NCBI databases using Biopython's Entrez module (ELink utility).
FreedomIntelligence / bio-entrez-searchSearch NCBI databases using Biopython's Entrez module (ESearch, EInfo, EGQuery utilities).
FreedomIntelligence / bio-genome-assembly-assembly-polishingImprove assembly accuracy by correcting errors using additional sequencing data.
FreedomIntelligence / bio-genome-assembly-assembly-qcEvaluate genome assembly quality with contiguity metrics (QUAST) and gene completeness (BUSCO).
FreedomIntelligence / bio-genome-assembly-long-read-assemblyAssemble genomes from Oxford Nanopore (ONT) or PacBio long reads for highly contiguous assemblies.
FreedomIntelligence / bio-genome-assembly-short-read-assemblyAssemble genomes from Illumina paired-end or single-end reads using SPAdes.
FreedomIntelligence / bio-genome-intervals-bed-file-basicsBED (Browser Extensible Data) format stores genomic intervals. Uses 0-based, half-open coordinates.
FreedomIntelligence / bio-genome-intervals-bigwig-tracksBigWig is an indexed binary format for continuous genomic data. Efficient for genome browsers and programmatic access.
