288 skills found · Page 3 of 10
foryourhealth111-pixel / geopandasPython library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files
samber / golang-databaseComprehensive guide for Go database access — parameterized queries, struct scanning, NULLable columns, transactions, isolation levels, SELECT FOR UPDATE, connection pool, batch processing, context propagation, and migration tooling
google-deepmind / interpro-databaseIdentify domains, families, and sites in proteins; find all proteins in a family or sharing a domain; explore species distribution for a domain; annotate genomes with protein families and GO terms. InterPro combines 14 databases (e.g., Pfam, CDD) into one searchable resource.
google-deepmind / gtex-databaseUse when you want to retrieve quantitative RNA expression data and variant eQTL information from the GTEx (Genotype-Tissue Expression) Project across 54 non-diseased tissue sites.
google-deepmind / human-protein-atlas-databaseUse when you want to retrieve semi-quantitative protein expression and spatial localisation data from the Human Protein Atlas (HPA).
google-deepmind / literature-search-europepmcSearch Europe PMC for scientific literature and download open-access full texts and PDFs. Retrieve full-text XML/plain text by PMCID, get citation lists and bibliography.
google-deepmind / ncbi-sequence-fetchRetrieve protein and nucleotide sequences from NCBI databases using E-utilities. Supports direct accession lookup, CDS translation, gene+organism search, locus lookup, PubMed-linked sequences, patent protein extraction, and organism+length fallback search
google-deepmind / pubmed-databaseSearch PubMed for scientific literature, including published clinical trials. Fetch abstracts and full text. Link published research to biological databases (gene, protein, nucleotide, PubChem) to discover associations between papers and specific compounds or genes.
google-deepmind / encode-ccres-databaseQuery the ENCODE Registry of cis-Regulatory Elements (cCREs) via the SCREEN GraphQL API, or make custom queries to the ENCODE Portal REST API for experiments and files (ChIP-seq peaks, etc.)
google-deepmind / literature-search-openalexQuery the OpenAlex scholarly database for research papers, authors, institutions, topics, sources, publishers, funders, geo-locations, and keywords
google-deepmind / opentargets-databaseQuery Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for therapeutic target identification.
google-deepmind / quickgo-databaseQuery the QuickGO and Evidence & Conclusion Ontology (ECO) REST API. Use this when you need to map genes to biological processes, molecular functions, or cellular components, find genes associated with a specific pathway/GO term, or explore the Gene Ontology hierarchy.
google-deepmind / jaspar-databaseQuery the JASPAR database for Transcription Factor (TF) binding profiles
google-deepmind / reactome-databaseQuery the Reactome database (Analysis and Content Services)
google-deepmind / unibind-databaseQueries the UniBind database for experimentally validated transcription factor (TF) binding sites
google-deepmind / alphafold-database-fetch-and-analyzeRetrieve and analyze AlphaFold predicted structures for a protein
google-deepmind / gnomad-databaseQuery the Genome Aggregation Database (gnomAD)
google-deepmind / string-databaseQuery the STRING database for protein-protein interactions (PPIs), functional enrichment, and homology
google-deepmind / protein-sequence-msaPerforms multiple sequence alignment of proteins with EBI Clustal Omega
microsoft / azure-postgres-tsConnect to Azure Database for PostgreSQL Flexible Server from Node.js/TypeScript using the pg (node-postgres) package. Use for PostgreSQL queries, connection pooling, transactions, and Microsoft Entra ID (passwordless) authentication.
microsoft / azure-resource-manager-cosmosdb-dotnetAzure Resource Manager SDK for Cosmos DB in .NET. Use for MANAGEMENT PLANE operations: creating/managing Cosmos DB accounts, databases, containers, throughput settings, and RBAC via Azure Resource Manager
microsoft / azure-resource-manager-sql-dotnetAzure Resource Manager SDK for Azure SQL in .NET. Use for MANAGEMENT PLANE operations: creating/managing SQL servers, databases, elastic pools, firewall rules, and failover groups via Azure Resource Manager
microsoft / azure-cosmos-javaAzure Cosmos DB SDK for Java. NoSQL database operations with global distribution, multi-model support, and reactive patterns. Triggers: "CosmosClient java", "CosmosAsyncClient", "cosmos database java", "cosmosdb java", "document database java".
microsoft / azure-cosmos-pyAzure Cosmos DB SDK for Python (NoSQL API). Use for document CRUD, queries, containers, and globally distributed data. Triggers: "cosmos db", "CosmosClient", "container", "document", "NoSQL", "partition key".
microsoft / azure-kustoQuery and analyze data in Azure Data Explorer (Kusto/ADX) using KQL for log analytics, telemetry, and time series analysis. WHEN: KQL queries, Kusto database queries, Azure Data Explorer, ADX clusters, log analytics, time series data, IoT telemetry, anomaly detection.
microsoft / azure-mgmt-mongodbatlas-dotnetManage MongoDB Atlas Organizations as Azure ARM resources using Azure.ResourceManager.MongoDBAtlas SDK
microsoft / azure-cosmos-db-pyBuild Azure Cosmos DB NoSQL services with Python/FastAPI following production-grade patterns
FreedomIntelligence / bindingdb-databaseQuery BindingDB for measured drug-target binding affinities (Ki, Kd, IC50, EC50). Search by target (UniProt ID), compound (SMILES/name), or pathogen. Essential for drug discovery, lead optimization, polypharmacology analysis, and structure-activity relationship (SAR) studies.
FreedomIntelligence / bio-clinical-databases-somatic-signaturesExtract and analyze mutational signatures from somatic variants using SigProfiler or MutationalPatterns to characterize mutagenic processes
FreedomIntelligence / arxiv-searchSearch arXiv physics, math, and computer science preprints using natural language queries. Powered by Valyu semantic search.
