2,823 skills found ¡ Page 80 of 95
jaechang-hits / pathmlComputational pathology toolkit for whole-slide images (WSIs): load slides, extract tiles, stain normalization, nuclear segmentation, feature extraction, and ML training. Supports H&E and multiplex. For end-to-end pipelines from raw WSIs to quantitative outputs.
jaechang-hits / multiqc-qc-reportsAggregates QC from 150+ bioinformatics tools into one interactive HTML report. Scans FastQC, samtools, STAR, HISAT2, Trim Galore, featureCounts, Kallisto, Salmon, Picard, GATK logs; merges per-sample stats with plots. For NGS pipeline-wide QC.
jaechang-hits / sciagent-skill-creatorScaffold a new SciAgent-Skills entry. Picks pipeline/toolkit/database/guide template, creates skills/{category}/{name}/SKILL.md with valid frontmatter, appends the registry.yaml entry, runs validation. Enforces name uniqueness, kebab-case, description keyword rules, schema rules from AGENTS.md.
jaechang-hits / exploratory-data-analysisMethodology for exploratory data analysis on scientific files. Decision frameworks by data type (tabular, sequence, image, spectral, structural, omics), quality assessment, report generation, format detection across 200+ formats
jaechang-hits / citation-managementSelecting a reference manager and applying citation styles. Compares Zotero, Mendeley, EndNote, Paperpile; covers APA/Vancouver/ACS/Nature styles, DOI management, citation tracking, and Word/Google Docs/LaTeX integration
jaechang-hits / scientific-schematicsDesigning scientific schematics, diagrams, and graphical abstracts. Covers tool selection (BioRender, Inkscape, Affinity, PowerPoint), design principles for pathway diagrams, mechanism schematics, experimental workflows, and journal graphical abstracts.
jaechang-hits / general-figure-guideUniversal QA checklist for generated scientific plots: overlapping labels, clipped text, missing axes/legends, overcrowded data, and cross-journal resolution/format guidance.
jaechang-hits / hypothesis-generationStructured hypothesis formulation: turn observations into testable hypotheses with predictions, propose mechanisms, design experiments. Follows the scientific method. Use scientific-brainstorming for open ideation; hypogenic for automated LLM hypothesis testing on datasets.
giuseppe-trisciuoglio / developer-kitModular plugin marketplace for Claude Code and agentic CLIs, with validated, spec-driven skills, agents, commands, and workflows for Java, TypeScript, Python, PHP, AWS, and AI.
giuseppe-trisciuoglio / langchain4j-rag-implementation-patternsProvides Retrieval-Augmented Generation (RAG) implementation patterns with LangChain4j for Java. Generates document ingestion pipelines, embedding stores, vector search, and semantic search capabilities
giuseppe-trisciuoglio / codexProvides Codex CLI delegation workflows for complex code generation and development tasks using OpenAI's GPT-5.3-codex models, including English prompt formulation, execution flags, sandbox modes, and safe result handling
giuseppe-trisciuoglio / sonarqube-mcpProvides SonarQube and SonarCloud integration patterns via the Model Context Protocol (MCP) server. Enables quality gate monitoring, issue discovery and triaging, pre-push code analysis, and rule education directly in the agent workflow
giuseppe-trisciuoglio / aws-cloudformation-bedrockProvides AWS CloudFormation patterns for Amazon Bedrock resources including agents, knowledge bases, data sources, guardrails, prompts, flows, and inference profiles
giuseppe-trisciuoglio / aws-cloudformation-lambdaProvides AWS CloudFormation patterns for Lambda functions, layers, API Gateway integration, event sources, cold start optimization, monitoring, logging, template validation, and deployment workflows
giuseppe-trisciuoglio / prompt-engineeringProvides workflows to write, debug, and optimize prompts for LLMs, including few-shot example selection, chain-of-thought structuring, system prompt design, and template composition
giuseppe-trisciuoglio / ragImplements document chunking, embedding generation, vector storage, and retrieval pipelines for Retrieval-Augmented Generation systems
giuseppe-trisciuoglio / docs-updaterProvides automated documentation updates by analyzing git changes between the current branch and the last release tag. Performs git diff analysis to identify modifications, then updates README.md, CHANGELOG.md following Keep a Changelog standard, and discovers documentation folders for contextual upâĻ
giuseppe-trisciuoglio / langchain4j-spring-boot-integrationProvides integration patterns for LangChain4j with Spring Boot. Configures AI model beans, sets up chat memory with Spring context, integrates RAG pipelines with Spring Data, and handles auto-configuration, dependency injection, and Spring ecosystem integration
giuseppe-trisciuoglio / langchain4j-testing-strategiesProvides unit test, integration test, and mock AI patterns for LangChain4j applications. Creates mock LLM responses, tests retrieval chains, validates RAG workflows, and implements Testcontainers-based integration tests for Java AI services
giuseppe-trisciuoglio / spring-boot-crud-patternsProvides and generates complete CRUD workflows for Spring Boot 3 services. Creates feature-focused architecture with Spring Data JPA aggregates, repositories, DTOs, controllers, and REST APIs. Validates domain invariants and transaction boundaries
giuseppe-trisciuoglio / geminiProvides Gemini CLI delegation workflows for large-context analysis and complex reasoning using Gemini 3.0 Flash and Gemini 3.0 Pro models, including English prompt formulation, execution flags, and safe result handling
giuseppe-trisciuoglio / qwen-coderProvides Qwen Coder CLI delegation workflows for coding tasks using Qwen2.5-Coder and QwQ models, including English prompt formulation, execution flags, and safe result handling
giuseppe-trisciuoglio / dynamodb-toolbox-patternsProvides TypeScript patterns for DynamoDB-Toolbox v2 including schema/table/entity modeling, .build() command workflow, query/scan access patterns, batch and transaction operations, and single-table design with computed keys
giuseppe-trisciuoglio / tailwind-css-patternsProvides comprehensive Tailwind CSS utility-first styling patterns including responsive design, layout utilities, flexbox, grid, spacing, typography, colors, and modern CSS best practices
giuseppe-trisciuoglio / github-issue-workflowProvides a structured 8-phase workflow for resolving GitHub issues in Claude Code. Covers fetching issue details, analyzing requirements, implementing solutions, verifying correctness, performing code review, committing changes, and creating pull requests
giuseppe-trisciuoglio / graalvm-native-imageProvides expert guidance for building GraalVM Native Image executables from Java applications
giuseppe-trisciuoglio / langchain4j-mcp-server-patternsProvides LangChain4j patterns for implementing MCP (Model Context Protocol) servers, creating Java AI tools, exposing tool calling capabilities, and integrating MCP clients with AI services
giuseppe-trisciuoglio / aws-lambda-java-integrationProvides AWS Lambda integration patterns for Java with cold start optimization
giuseppe-trisciuoglio / spring-boot-cacheProvides patterns for implementing Spring Boot caching: configures Redis/Caffeine/EhCache providers with TTL and eviction policies, applies @Cacheable/@CacheEvict/@CachePut annotations, validates cache hit/miss behavior, and exposes metrics via Actuator
giuseppe-trisciuoglio / nextjs-deploymentProvides comprehensive patterns for deploying Next.js applications to production
