xuzhougeng
xuzhougeng / local-env-setup
1.2kPrepare optional local Python/R runtimes, user-configured Python MCP servers, Node/scimaster-cli, and pixi for the user’s task. Reuse detected paths, configure Wisp interpreters, and apply mirrors when needed. Use for 配置环境, missing runtime dependencies, or requested local installations.
xuzhougeng / pixi-environment-builder
1.2kUse when creating, migrating, or debugging pixi environments, especially for scientific Python, bioinformatics, single-cell analysis, CUDA/PyTorch, Jupyter/VS Code kernels, conda-to-pixi migration, or conda + PyPI mixed dependency issues.
xuzhougeng / research-integrity-audit
1.2k学术审查 / research-integrity screening of a manuscript's figures and reported numbers. Finds duplicated, reused, or transformed image panels and data anomalies: copied value blocks, fixed differences/ratios between groups, digit patterns, Benford deviations, GRIM/GRIMMER-inconsistent means and SDs, p-v…
xuzhougeng / singlecell-qc
1.2kUse when designing, reviewing, or implementing single-cell RNA-seq QC in Python or R with a human-in-the-loop, data-driven approach.
xuzhougeng / figure-style
1.2kCorrectness and legibility checklist for publication figures, plus a matplotlib sidecar. Load before plotting anything and call `apply_figure_style()` (role-mapped font ladder, outward ticks, frameless legends, 300-dpi saves, CJK-safe fonts).
xuzhougeng / journal-club-ppt
1.2kUse this skill whenever the user provides a scientific paper PDF and asks for a group-meeting literature report, journal-club slides, 文献汇报PPT, 组会PPT, paper presentation, article walkthrough, or to explain a paper with PowerPoint.
xuzhougeng / analysis-workflow
1.2kOrganize multi-step scientific analyses into reproducible, self-contained modules. Use for workflows such as QC→PCA→DEG→GSEA that produce scripts, inputs, figures, tables, and methods.
xuzhougeng / distill-concept-books
1.2k将概念、理论或分析方法类图书蒸馏为证据可追溯、经人工门禁审核且不暴露书名、作者、出版社等来源身份的任务型 Skill 候选。用于新建或恢复图书蒸馏、以本地 Tesseract 扫描 DOCX 全部内嵌图像或 Poppler 渲染的扫描 PDF 全页、建立 source map 与 evidence/claim/relation/capability rule、用第一性原理重构可迁移方法，以及按权威 task contract 防止上下文压缩后的产品任务漂移；仅在本元 Skill 自身的 owning distillation 中路由其 Gate 4 评测。不用于单纯摘要、事实问答、人物思维模仿…
xuzhougeng / public-data-access
1.2kPlan, validate, and document public-bioinformatics data acquisition for GEO/GSE/GSM/GPL/GDS, SRA/ENA, TCGA/GDC, GTEx, and DepMap. Covers expression matrices, raw reads, download manifests, caches, and optional geokit SOFT/Series Matrix acquisition for R workflows.
xuzhougeng / remote-compute-ssh
1.2kSubmit recoverable SSH-direct research Runs with live progress cards and model-free monitoring, including Slurm, PBS, LSF, and Grid Engine batch jobs from a cluster login node.
xuzhougeng / agent-infini
1.2kUse the InfiniSynapse CLI (`agent_infini`) for multi-turn AI data-analysis tasks, database/RAG context, and task workspace files
xuzhougeng / pdf-explore
1.2kUse this skill when the user has attached a PDF, paper, report, or other document and the answer needs its content: summarize a section, compare sections, read specific pages, check the table of contents, or read a value off a figure.
xuzhougeng / word-zotero-citations
1.2kBuild, audit, authorize, recover, or finalize dynamic Zotero citations and bibliographies in Microsoft Word DOCX files with a protected-source, digest-bound workflow.
xuzhougeng / browser-use
1.2kUse this skill to drive Wisp Browser Runtime sessions (shared daily Chrome or workspace Chrome) — open pages, read them, click, fill and submit forms, navigate, switch tabs, or scrape content that needs the user's existing cookies and login state.
xuzhougeng / custom-theme
1.2kAuthor a Wisp custom theme CSS file that uses documented tokens and import constraints
xuzhougeng / compute-env-setup
1.2kSet up and validate a reproducible Python or R environment on a Wisp execution context. Use for a selected local, WSL, or direct SSH context when installing scientific packages, configuring caches, recording interpreter activation, or producing an environment smoke test.
xuzhougeng / computer-use
1.2kUse Cua Driver through MCP to inspect and operate the user's native desktop apps on Windows, macOS, or Linux. Trigger when a task requires a desktop application, native file dialog, OS window, signed-in browser UI, screenshot-grounded interaction, or a result that must be verified in the application…
xuzhougeng / figure-composer
1.2kCompose or improve a publication-grade multi-panel scientific figure from a claim, concrete data paths, or an existing image. Use for figure outlining, parallel panel rendering, exact-grid composition, visual inspection, and adversarial figure review.
xuzhougeng / indication-dossier
1.2kBuild a sourced research dossier for one therapeutic indication — patient population, epidemiology, disease biology, standard of care, regulatory path, and landmark trials
xuzhougeng / OpenAlex
1.2kRetrieve, verify, and synthesize scientific literature. Use for seminal-paper lookups, evidence summaries, method comparisons, and gap analyses. Every citation must come from a live lookup, never from memory; retractions are checked; the deliverable is argued prose with resolvable DOI links.
xuzhougeng / audit-biomedical-paper-evidence
1.2k审读用户提供的生命科学或生物医学论文、PDF、摘要、正文、figure、panel、caption 或截图，定位核心科学问题，逐图解释实验设计和证据链，审计机制、因果性、rescue、方法边界、正交验证与局限。材料缺失时请求补充或转介检索；不提供医疗建议、临床决策或可直接执行的湿实验 SOP。